PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4252330.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 290aa    MW: 32015.3 Da    PI: 8.4568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4252330.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013225247223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp C+  Fs+   L+ H ++ H
  Lj1g3v4252330.1 225 QCPQCSAKFSSVTALVDHVQKvH 247
                      7******************9988 PP
2zf-C2H212.20.00055263284323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp+C+k F ++ +L+ H  + H
  Lj1g3v4252330.1 263 CPKCSKGFLDPVSLVEHVERdH 284
                      *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.9E-10559No hitNo description
PROSITE profilePS510397.982756IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.8E-101153IPR000058Zinc finger, AN1-type
SMARTSM001542.1E-41352IPR000058Zinc finger, AN1-type
PfamPF014282.5E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.0E-991150IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.14E-893143No hitNo description
PROSITE profilePS510397.70598147IPR000058Zinc finger, AN1-type
SMARTSM0035514099129IPR015880Zinc finger, C2H2-like
SMARTSM001540.047101142IPR000058Zinc finger, AN1-type
PfamPF014281.2E-7101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.683224252IPR007087Zinc finger, C2H2
SMARTSM003550.0094224247IPR015880Zinc finger, C2H2-like
PfamPF138943.7E-4225247No hitNo description
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808261289IPR007087Zinc finger, C2H2
SMARTSM0035514261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTAEFPDLC KHCSVADCKL IDFLPFSCDR CNQVYCLEHR SYIKHQCTKA DKRDVTVVIC  60
PLCAKGVRLI PEQDPNITWE NHVNTDCDPS NYEKATKKIK CPVPGCREIL VFSNTIKCRD  120
CLVDHCLKHR FGPDHKCSGP KKLETSFSFM SFMNRSRKDA PKPNLTSSSS SNWTTSFLNM  180
ASNIRASAEA SISKLSGETN QAMQTSRGGV GQSSGSGNRN YQAEQCPQCS AKFSSVTALV  240
DHVQKVHERS GNRSGVKKTI DACPKCSKGF LDPVSLVEHV ERDHGGSSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4252330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204987.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
RefseqXP_025660786.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ0D5B91e-119SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A444YHL50.0A0A444YHL5_ARAHY; Uncharacterized protein
STRINGGLYMA03G29400.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]