PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4048450.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 272aa MW: 29737.9 Da PI: 4.9678

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4048450.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Lj1g3v4048450.2 41 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.008	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-32	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-26	41	96	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.76E-17	41	95	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	6.3E-24	128	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVPQKSQGGG GGAEQLANVG VLALGGSAAV RSPTPAGGNG KQRLRWTSDL HDRFVDAITQ 60 LGGPDRATPK GVLRVMGVPG LTIYHVKSHL QKYRLAKYLP DSLVDDSKEE KRTSGDSTSG 120 VDSSPGLQIN DALRMQMEVQ KRLHEQLEVQ KQLQMRIEAQ GKYLQKIIEE QQKLGSTLTV 180 SEMLPLSHDK QNHPQSEPSG SSDALAGTLS PHKRRRIDDG SNDDLAASQD PRETAQKNDC 240 NVGQLDPNLY EDDAGFGYDL ERENDEDEES EQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-24	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	216	KRRRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.10859	0.0	cell culture\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4048450.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493285.1	1e-157	myb family transcription factor PHL7-like isoform X1
Refseq	XP_004493286.1	1e-157	myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	5e-71	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1S2XR95	1e-155	A0A1S2XR95_CICAR; myb family transcription factor PHL7-like isoform X1
TrEMBL	A0A1S2XR99	1e-155	A0A1S2XR99_CICAR; myb family transcription factor PHL7-like isoform X2
STRING	XP_004493285.1	1e-156	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-66	G2-like family protein