PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4048450.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 283aa MW: 31079.4 Da PI: 5.1006

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4048450.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.7e-33	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Lj1g3v4048450.1 52 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.008	49	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-32	51	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	52	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-26	52	107	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-24	139	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYQEKKFSPT TMVPQKSQGG GGGAEQLANV GVLALGGSAA VRSPTPAGGN GKQRLRWTSD 60 LHDRFVDAIT QLGGPDRATP KGVLRVMGVP GLTIYHVKSH LQKYRLAKYL PDSLVDDSKE 120 EKRTSGDSTS GVDSSPGLQI NDALRMQMEV QKRLHEQLEV QKQLQMRIEA QGKYLQKIIE 180 EQQKLGSTLT VSEMLPLSHD KQNHPQSEPS GSSDALAGTL SPHKRRRIDD GSNDDLAASQ 240 DPRETAQKND CNVGQLDPNL YEDDAGFGYD LERENDEDEE SEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	51	109	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	227	KRRRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.10859	0.0	cell culture\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4048450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020219241.1	1e-162	myb family transcription factor PHL7 isoform X2
TrEMBL	A0A1S2XR95	1e-160	A0A1S2XR95_CICAR; myb family transcription factor PHL7-like isoform X1
STRING	XP_004493285.1	1e-161	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-66	G2-like family protein