PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3991510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 469aa    MW: 51120 Da    PI: 6.8608
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3991510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.41.5e-38101160261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ 
  Lj1g3v3991510.1 101 PDKIVQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRSVPVGAGRRKNKQL 160
                      7899*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3189158IPR003851Zinc finger, Dof-type
PfamPF027016.5E-32103159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.053105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSETNKDSGI KLFGRKILVS PECQIPANSG HTDAFSSTKK TQVETPCAEY SKQQENPSDS  60
RDIKEDSEHN VKENKPIVNS NPVEDNMDTD NAEQDKILKK PDKIVQCPRC NSMDTKFCYF  120
NNYNVNQPRH FCKSCQRYWT AGGTMRSVPV GAGRRKNKQL ASQFRHIIVN SEGIPTSRLE  180
TTGSYGYQQH MSSDFRPSTE NGTVLKFGPN APLYESMESM LNLREQKRIA DSNSSSCVEY  240
GEEPSTCVSS VTNSATQGNE FSENNTSNLL QYHPVPPWVL PWNPGWNNVA SLGVIHQSSS  300
PMCNPAMQWC PAPMVAIPGT CPTSIPLQHV PASYLGGTPL YAAGTGTLST GSNACVSPSS  360
STTTSSCSGN GSPILGKHTR DITVFTDDER SENCVLAPKA IRICDPNEAS KSSLWTTLSI  420
KPDKLHQSLS DGGCLRKIEP KGDGEDRVLG ASQILEANPA AISRAHAFQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.139870.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3991510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1428150.0BT142815.1 Lotus japonicus clone JCVI-FLLj-22L9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219177.10.0cyclic dof factor 1-like
TrEMBLI3SQR70.0I3SQR7_LOTJA; Uncharacterized protein
STRINGGLYMA19G29610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-55cycling DOF factor 2