PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3964530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GATA | ||||||||
Protein Properties | Length: 274aa MW: 30622.8 Da PI: 7.6974 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.1 | 9e-17 | 200 | 234 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l Lj1g3v3964530.1 200 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 234 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.9E-15 | 194 | 244 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-14 | 195 | 258 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-13 | 198 | 235 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.095 | 198 | 230 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.85E-12 | 199 | 246 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 200 | 225 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-14 | 200 | 234 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MTMDVCQNVS VPSECQKQEQ QQALATNCSI DDLFSAQNME VDNGLEWLSE FVEDCFSTPS 60 GCVLVPASVQ TASTSSKSKP LGTTVQKPLE SESPLQKNSV PGKARSKRKR LSAPRTKDPL 120 SMWSHHLNPQ NEAFGPDPPL LKQDYWLADS ELIVKKEEQE VTTKEEQEVV VVVKKEIIVK 180 EEFEDGEVSN NGQNPMPRRC THCLSQRTPQ WRAGPLGPKT LCNACGVRYK SGRLHPEYRP 240 AKSPTFVSFL HSNSHKKVME MRMAPLSSIP ISKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25392 | 0.0 | cell culture |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3964530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093501 | 2e-80 | BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352729.1 | 1e-142 | GATA transcription factor 5-like | ||||
TrEMBL | A0A371EV45 | 1e-133 | A0A371EV45_MUCPR; GATA transcription factor 9 (Fragment) | ||||
STRING | XP_007161927.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-35 | GATA transcription factor 9 |