PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3948230.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 397aa    MW: 45333.4 Da    PI: 6.959
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3948230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM186.27.5e-58161431129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee++v+yL++kv+++++++ ++i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++
  Lj1g3v3948230.1  16 LPPGFRFHPTDEEIIVYYLTEKVKNSSFSA-TAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIFK 108
                      79**************************99.88***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle
  Lj1g3v3948230.1 109 GKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143
                      ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6214167IPR003441NAC domain
PROSITE profilePS5100558.61216167IPR003441NAC domain
PfamPF023653.2E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEEPIVLNKG DEPLDLPPGF RFHPTDEEII VYYLTEKVKN SSFSATAIGE ADLNKCEPWD  60
LPKKAKMGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIFKGK GNLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEF RLEGKFASYS LPKIAKDEWV VSRVFHKSTD VKKSPIPGLL  180
RMNSIGDQHD LLDYSSLPPL MDPSYNKPSS FNEDDFKGTN PISSSSTKSP SDGYYLPSFS  240
INNHHHMIKP EDQRNYEMNT IPTINYTSNL SNPMGNNNNT FSHSQFQKNL LLPDYYVHQN  300
RISGFGNNNN NHDDQAFLRA FASNNHNDYI SVLEKQCKVE QFSSNHSQDT GLSNDRNTTE  360
TSSVVSGRNR ASLYEDLDQG PASVARAFSD LECLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-531417315171NO APICAL MERISTEM PROTEIN
1ut4_B3e-531417315171NO APICAL MERISTEM PROTEIN
1ut7_A3e-531417315171NO APICAL MERISTEM PROTEIN
1ut7_B3e-531417315171NO APICAL MERISTEM PROTEIN
4dul_A3e-531417315171NAC domain-containing protein 19
4dul_B3e-531417315171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.70600.0cell culture| floral bud| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3948230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065510.0AP006551.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35D17, TM0104, complete sequence.
GenBankAP0065520.0AP006552.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28G12, TM0107, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350151.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-113NAC87_ARATH; NAC domain-containing protein 87
TrEMBLV7CWR80.0V7CWR8_PHAVU; Uncharacterized protein
STRINGXP_007161814.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-114Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]