PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v3948170.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 337aa MW: 38010 Da PI: 9.1282

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3948170.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	1e-52	6	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ Lj1g3v3948170.1 6 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKLDPWELPGKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVA 98 79**************************.89***********8777899*********************************** PP NAM 95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g+kk Lvfykg+ pkg+kt+W+mheyrl Lj1g3v3948170.1 99 SlpgggrAQDSIGVKKALVFYKGKPPKGVKTNWIMHEYRL 138 99998766667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-65	3	165	IPR003441	NAC domain
PROSITE profile	PS51005	61.871	6	165	IPR003441	NAC domain
Pfam	PF02365	7.4E-28	7	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAESNLPPGF RFHPTDEELI LHYLRKKVAS IPLPVSIIAE VDIYKLDPWE LPGKALFGEK 60 EWYFFSPRDR KYPNGARPNR AAASGYWKAT GTDKTIVASL PGGGRAQDSI GVKKALVFYK 120 GKPPKGVKTN WIMHEYRLVD HNKPIKLKDT SMRLDDWVLC RIYKKSKCAL SPTEAGTGVG 180 EVDQAEEQLL NDTVFPNTLI SQKSVSFSNL LDAMDYSMLS SFLSENHYNQ TGTGSSAGFN 240 NLDQQSSTIN TTNGYMFQMK NTQLNHSASN TENTRPKREL SNIDEETVYP SKKYLNSSCN 300 FTNINAQLEK NPQWNHLMKQ SLLNQQLLLG PHLHFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-73	1	169	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-73	1	169	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-73	1	169	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-73	1	169	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-73	1	169	15	172	NAC domain-containing protein 19
3swm_B	1e-73	1	169	15	172	NAC domain-containing protein 19
3swm_C	1e-73	1	169	15	172	NAC domain-containing protein 19
3swm_D	1e-73	1	169	15	172	NAC domain-containing protein 19
3swp_A	1e-73	1	169	15	172	NAC domain-containing protein 19
3swp_B	1e-73	1	169	15	172	NAC domain-containing protein 19
3swp_C	1e-73	1	169	15	172	NAC domain-containing protein 19
3swp_D	1e-73	1	169	15	172	NAC domain-containing protein 19
4dul_A	1e-73	1	169	12	169	NAC domain-containing protein 19
4dul_B	1e-73	1	169	12	169	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.15938	0.0	cell culture\| floral bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3948170.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006551	0.0	AP006551.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35D17, TM0104, complete sequence.
GenBank	AP006552	0.0	AP006552.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28G12, TM0107, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027940297.1	0.0	NAC transcription factor 29-like
Swissprot	Q84TD6	1e-110	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A0B2PKC6	0.0	A0A0B2PKC6_GLYSO; NAC domain-containing protein 29
TrEMBL	B9U5I1	0.0	B9U5I1_SOYBN; Transcriptional factor NAC11
STRING	GLYMA16G04740.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-106	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]