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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3904450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23969.2 Da PI: 7.9064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a++aa++k++g Lj1g3v3904450.1 41 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 90 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 40 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.264 | 41 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-39 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 41 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 41 | 99 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.50E-23 | 41 | 99 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNQINSSNSH GGLSTSSLIE MQDDPSQKPL QKGNTNERKR HYRGVRQRPW GKWAAEIRDP 60 KKAARVWLGT FDTAEAAAAA YDAAALKFKG TKAKLNFPER VNNNNNNHHH VASSASTPPL 120 PLVYQHTPPL LPPSEGEEGG EGFPNLMQYA QLLWSRGDDD VQHAASSLFS TSSAMPTPTN 180 HDQQQHVGDR NLNPGAHQQG DYDHCGSSGN SSFFKGFPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-26 | 40 | 103 | 4 | 68 | ATERF1 |
3gcc_A | 6e-26 | 40 | 103 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3904450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014627150.1 | 5e-49 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Refseq | XP_020981543.1 | 6e-51 | ethylene-responsive transcription factor ERF113 | ||||
Refseq | XP_028216736.1 | 4e-48 | uncharacterized protein LOC114398791 | ||||
Swissprot | Q9LYU3 | 2e-38 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | K7MXN6 | 1e-48 | K7MXN6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G27790.2 | 2e-49 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 3e-33 | related to AP2 6l |