PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3892240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25298.7 Da PI: 9.9419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.5 | 8.2e-30 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+G+rF+Ptd+ lv+ yLk+k+ +++l++ +v++e+d+++vePw+Lpk k +++++++F +r + +++ r++ +g W+ + k k Lj1g3v3892240.1 9 LPVGYRFDPTDDVLVDAYLKRKIFSQPLPV-DVVPELDVFQVEPWRLPKgdeK--IfTDRQYFWFNTRGRDL--ESQDWRVAGNGQWRMSKKGK 97 799***************************.99***************53322..22556777777777765..57999*99*****9666666 PP NAM 91 evlsk.kgelvglkktLvfykg.rapkgektdWvmheyrle 129 +v +++l+g k+tL+f+k+ a +++t+Wvmhe+rle Lj1g3v3892240.1 98 DVPIPgDNQLIGKKNTLIFWKEqGAAAAKETKWVMHEFRLE 138 6655548899**********6536777899********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-33 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.215 | 9 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-17 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MENHLNPRLP VGYRFDPTDD VLVDAYLKRK IFSQPLPVDV VPELDVFQVE PWRLPKGDEK 60 IFTDRQYFWF NTRGRDLESQ DWRVAGNGQW RMSKKGKDVP IPGDNQLIGK KNTLIFWKEQ 120 GAAAAKETKW VMHEFRLEII ASPTRMSHLA MYRIFQKKGV KKVRHGPHRR GGRNAAIGGM 180 NSGSTADVID LNEESGSFSG PPPMTPSLSE GSDSGENYIR SW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-24 | 2 | 158 | 10 | 169 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3892240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009634 | 1e-146 | AP009634.1 Lotus japonicus genomic DNA, clone: LjB16I02, BM1852, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352865.1 | 2e-58 | NAC domain-containing protein 83-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 6e-21 | NAC family protein |