PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3668860.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 397aa    MW: 44259.2 Da    PI: 4.695
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3668860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.86.6e-30561962128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tks 80 
                      p+G++F+P+d el+ e+L++k+   +    + ++e+i++++    i++++P++Lp  ++++ + ++fF ++ ++y+tg+rk+r         ++
  Lj1g3v3668860.1  56 PVGVKFDPSDAELL-EHLAAKCGIGNakphMFIQEFIPTLEgdegICYTHPENLP-GANKDGSYVHFFNRTINAYTTGQRKRRRihydgltEDH 147
                      89************.99**99887775555333344554423344**********.556677899******************75677763337 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+k+v++ +g ++g kk++v+y  +++ +k++k++W+mh+y+l
  Lj1g3v3668860.1 148 VRWHKTGKTKAVVE-NGVHKGYKKIMVLYirSNKGSKPSKSNWIMHQYHL 196
                      88************.999***********8756777888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3539215IPR003441NAC domain
PROSITE profilePS5100529.49955215IPR003441NAC domain
PfamPF023651.5E-1256196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MARSWLIDIG GFAKKVKSTA LSSSEQIKDC GAYRECPNCS YHIDNSDVSI EWPGFPVGVK  60
FDPSDAELLE HLAAKCGIGN AKPHMFIQEF IPTLEGDEGI CYTHPENLPG ANKDGSYVHF  120
FNRTINAYTT GQRKRRRIHY DGLTEDHVRW HKTGKTKAVV ENGVHKGYKK IMVLYIRSNK  180
GSKPSKSNWI MHQYHLGPEE DEKDGEYVVS KIFYQQQKQT DKNEENPMAE DSDIITSRTS  240
PRTPKPNPPN PPRTGKCVDC DDNIDEAALS FAQDVKYIPG GSHAPLFDIQ DLDNRGNPAW  300
LAGESQALEV AEFDGLDDIL LCNEILDSSA LLNDDFGLDS TTLNGFSSYD NIMAGNDNVT  360
RGTSVLDTLE LDTPPDFDLS NLNFGSQDSI LGWMDRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132136RKRRR
2133137KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3668860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348042.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A1S2Y4U30.0A0A1S2Y4U3_CICAR; SUPPRESSOR OF GAMMA RESPONSE 1
STRINGXP_004499395.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.12e-95NAC domain containing protein 85