PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3580670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 493aa    MW: 53643.3 Da    PI: 6.0266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3580670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09300347455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lj1g3v3580670.1 300 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 347
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-10294351No hitNo description
SuperFamilySSF474596.54E-17294365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-17296364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6300347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MENQFFSNGG VPPQLHFDPS MPTWQSPPPP QSSEQNQDCF YNTQTWENST DHHALHFDSA  60
MSSMVSSPAA SNSNMSSDNF AIRELIGKLG NIGGGGDEIS PGFLKSMALN STVAEFSGDP  120
GFAARAAKFS CIGSRSFNGR SSQLGLNNNA ELTQSQRSPS LMENGMLLPR VSSSPSLKLL  180
GSQMEGTNSQ EESTISEQKP SPCVNSRKRK ASSRGKAKET ANSTNPPMDA EASEDQNAKR  240
GKPNEDEGKE KNGSVKAEED SKAGTSSGGD EKQNMSSSKP PEPPKDYIHV RARRGQATDS  300
HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLSSV  360
NTRLDFSTES LISKDIFQSN NSLAQPLFPL DSSAQAFYGQ QPQQNSAIHN NFPNGTVTHT  420
SVDPLHTGDL CQNLGMQLLP LNGINEGGSQ FPLTFSEDDL HTIVQMGFGQ TANRKTPIRF  480
QSINGSNQVP YEN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.81320.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3580670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1380390.0BT138039.1 Lotus japonicus clone JCVI-FLLj-21F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336099.10.0transcription factor bHLH62-like
TrEMBLI3SC420.0I3SC42_LOTJA; Uncharacterized protein
STRINGGLYMA08G46040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-91bHLH family protein