PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3560250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26359.9 Da PI: 10.0093 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4e-11 | 109 | 150 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Lj1g3v3560250.2 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 150 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.0E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-5 | 108 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-7 | 109 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-6 | 111 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGSSSFV TPLPLYCENL TGSENSNWHA KPKSEQPVLS DDASILDSNT 60 IVQEEPGSSN ISGSSSSKEQ LMQQTPGPPV KRRKRHRRKN LHNQETCLMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTVGSQEE AAHLYDRAAF MCGREPNFEL PEEEKRELHK FKWDEFLAVT 180 RQAITRKKHK RRLSPGPLDN GLELLPLQKD DWESKQGVSG FSACETSISR KS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 192 | RKKHKRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.8855 | 0.0 | floral bud| pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3560250.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT148311 | 0.0 | BT148311.1 Lotus japonicus clone JCVI-FLLj-4D9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020203925.1 | 1e-117 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | A0A0U1W0K3 | 1e-169 | A0A0U1W0K3_LOTCO; AP2/ERF | ||||
STRING | GLYMA08G46250.4 | 1e-115 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-46 | ERF family protein |