PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3560250.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 233aa    MW: 26431 Da    PI: 10.0093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3560250.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84e-11110151351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Lj1g3v3560250.1 110 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 151
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-4109166IPR001471AP2/ERF domain
PfamPF008471.9E-5109152IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-7110154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-6112160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGSSSFV TPLPLYCENL TGSENSNWHA KPKSEQPVLS DDASILDSNT  60
IVQEEPGSSN ISGSSSSKEQ LMQQTPAGPP VKRRKRHRRK NLHNQETCLM RGVYFKNMKW  120
QAAIKVDKKQ IHLGTVGSQE EAAHLYDRAA FMCGREPNFE LPEEEKRELH KFKWDEFLAV  180
TRQAITRKKH KRRLSPGPLD NGLELLPLQK DDWESKQGVS GFSACETSIS RKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193RKKHKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.88550.0floral bud| pod
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3560250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1483110.0BT148311.1 Lotus japonicus clone JCVI-FLLj-4D9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203924.11e-118ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP93e-44ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLI3T6G31e-172I3T6G3_LOTJA; Uncharacterized protein
STRINGGLYMA08G46250.41e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-46ERF family protein