PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lj1g3v3466130.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

M-type_MADS

Protein Properties

Length: 156aa MW: 18118.1 Da PI: 5.1046

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3466130.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.7	2e-10	11	49	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i ++s r+ tf kR+n i+KK +EL L++ +++ ii s Lj1g3v3466130.1 11 IADHSLRKATFNKRKNDIIKKLKELTFLTGLRACAIISS 49 8899********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.283	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.9E-13	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-17	1	84	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.30E-17	2	85	No hit	No description
PRINTS	PR00404	4.0E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-9	11	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MTRAKVELAY IADHSLRKAT FNKRKNDIIK KLKELTFLTG LRACAIISSV FNAPPEVWPN 60 TEEAMDVVEK YHDAPALNES DNLHPLSFMM QTISKLQDVL EKKLRRIRED ELTMVMFNYM 120 EDKTLPEDLS FEDCNIINEL VQKKIEEIDL KIAMLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3466130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13237	9	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	3e-26	M-type_MADS family protein