PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3444280.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 604aa    MW: 67135.4 Da    PI: 9.317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3444280.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08512561147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Lj1g3v3444280.3 512 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdnaKHRTYVDLKDKWKTL 561
                      567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.14E-6318405IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.674507566IPR017930Myb domain
SMARTSM007171.4E-7511564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10512562IPR009057Homeodomain-like
CDDcd116609.15E-17513563No hitNo description
SuperFamilySSF466891.28E-15513594IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MVLQKRLNYG FDGYRAPSIP RASRSARGRG TIRKKPDSSQ IQAFEILASV AGNFLQQNES  60
SIPDNAADYA KDPHSFAGTN IKDKQEHEAG LFNGDLFEHG NCSGISSACI PSLQGKHDNQ  120
RLLDDSSILG NDLEGQGQNV LEREDERVKG RKTNEKIIRI KGSSKGLTEP SHRASKDCSS  180
ENFVGKPSLE NLDSLPNGST SRKLVTRDDD ENFVTCTKLS SRNNISGPLP DVLKFKDASP  240
FTNDENNSRD NSVFEISQRM YPFKKRKFFH LASSAASDRG SHCQGIFDSS DTRVNGINEC  300
TAIEESSSEA GQQGHHGSRG CNVKLSIKSF KVPELFIDIP ETATIGSLKR TVMEAVTTIL  360
GDELHVGILL QGKKVRDDSK TLIQTGISQD DKRHRLGFML EPRHPRISPS SYNEDPCLLN  420
PGSQQKLSKQ STSLMLQQGP YNVSQERSLI KIENCAEGDL NMVSSLADTS ANNNMSKCRA  480
LVAVPAINMN ALAVVPFRRK SGNPDYAQRR IRRPFSVLEV EALVQAVEKL GTGRWRDVKQ  540
RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSQQQCKHQ  600
LKPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-554966041109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257266QRMYPFKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.164600.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3444280.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063620.0AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350155.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_027350156.10.0telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A371IED40.0A0A371IED4_MUCPR; Telomere repeat-binding protein 5 (Fragment)
STRINGGLYMA18G39911.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-93TRF-like 2