PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3444280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 604aa MW: 67135.4 Da PI: 9.317 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.1e-08 | 512 | 561 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + ++ k+Rt ++k++w ++ Lj1g3v3444280.1 512 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdnaKHRTYVDLKDKWKTL 561 567888999**********************99**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 3.14E-6 | 318 | 405 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.674 | 507 | 566 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-7 | 511 | 564 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 512 | 562 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 9.15E-17 | 513 | 563 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-15 | 513 | 594 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MVLQKRLNYG FDGYRAPSIP RASRSARGRG TIRKKPDSSQ IQAFEILASV AGNFLQQNES 60 SIPDNAADYA KDPHSFAGTN IKDKQEHEAG LFNGDLFEHG NCSGISSACI PSLQGKHDNQ 120 RLLDDSSILG NDLEGQGQNV LEREDERVKG RKTNEKIIRI KGSSKGLTEP SHRASKDCSS 180 ENFVGKPSLE NLDSLPNGST SRKLVTRDDD ENFVTCTKLS SRNNISGPLP DVLKFKDASP 240 FTNDENNSRD NSVFEISQRM YPFKKRKFFH LASSAASDRG SHCQGIFDSS DTRVNGINEC 300 TAIEESSSEA GQQGHHGSRG CNVKLSIKSF KVPELFIDIP ETATIGSLKR TVMEAVTTIL 360 GDELHVGILL QGKKVRDDSK TLIQTGISQD DKRHRLGFML EPRHPRISPS SYNEDPCLLN 420 PGSQQKLSKQ STSLMLQQGP YNVSQERSLI KIENCAEGDL NMVSSLADTS ANNNMSKCRA 480 LVAVPAINMN ALAVVPFRRK SGNPDYAQRR IRRPFSVLEV EALVQAVEKL GTGRWRDVKQ 540 RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSQQQCKHQ 600 LKPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-55 | 496 | 604 | 1 | 109 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 266 | QRMYPFKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.16460 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3444280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006362 | 0.0 | AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027350155.1 | 0.0 | telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_027350156.1 | 0.0 | telomere repeat-binding protein 5-like isoform X1 | ||||
TrEMBL | A0A371IED4 | 0.0 | A0A371IED4_MUCPR; Telomere repeat-binding protein 5 (Fragment) | ||||
STRING | GLYMA18G39911.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13188 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 3e-93 | TRF-like 2 |