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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3370960.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | DBB | ||||||||
Protein Properties | Length: 193aa MW: 21400.8 Da PI: 6.0163 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.4e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e++ fC ++ lC++C ++H+ H+ Lj1g3v3370960.2 4 QCDVCDKVEASVFCPADEAALCHSCDRAIHHAnklaskHE 43 7******99********************74446666665 PP | |||||||
2 | zf-B_box | 27.4 | 6.8e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e ++ lfC++++ lC++C l++H+ Ht Lj1g3v3370960.2 56 PLCDICQERRACLFCQEDRAILCRECDLSIHRAneHT 92 78*****************************768865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.978 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.97E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.4E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.17E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 3.9E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKIQCDVCDK VEASVFCPAD EAALCHSCDR AIHHANKLAS KHERFTLHHP SSIDLPLCDI 60 CQERRACLFC QEDRAILCRE CDLSIHRANE HTQKHNRFLL TGLKLSNTCL DSDSSSTDRI 120 TVSSEARNSR SSKASRPRSG SNENACSSLR FEDNMASDTG SASTSSISEY LIETIPGYCF 180 EDFLDASFAP NGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3370960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027357013.1 | 1e-106 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 4e-61 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A445KUW5 | 1e-100 | A0A445KUW5_GLYSO; B-box zinc finger protein 20 | ||||
TrEMBL | I1JSK5 | 3e-98 | I1JSK5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G01120.1 | 5e-99 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-58 | salt tolerance homolog2 |