PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3343860.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 340aa    MW: 39217.8 Da    PI: 6.7786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3343860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-10287335348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W++ E+e l +av+++G g+Wk+  +      ++Rt+ ++k++w++ +
  Lj1g3v3343860.1 287 KWSQLEEETLEKAVNKFGIGNWKLMLNAHKdvfERRTDGDLKDKWRNMR 335
                      8***********************8888889***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.468280339IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-10282336IPR009057Homeodomain-like
SMARTSM007172.7E-5284337IPR001005SANT/Myb domain
CDDcd116608.83E-17286336No hitNo description
PfamPF002491.4E-7286334IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-12286337IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDGDTGRWAL EFFIGKRIIN NTLIQEIIRT IKVPPNPNSY FIKSLLLRIL QERLQIESID  60
ESMLEIMEIL EEVLRSEGSP VSASFTAAYC AVAVECTLKY IKLEGSIPRY FDSVKTIWWK  120
RVMNMKPSPG GEKRSLLFSD ELDRWRIDIE ASLNDPCVRD RLAATENTRS VAINRLKVFF  180
AELWEGVDPS FLELAVENAA TDAAEEQQRE TQEGNLLLDD ICITNVVEEM DPSTTCQSDV  240
PPTTTNAHAH EGETSNRPQL PSPKRKRVSP LKKYEPRNVI KRRTTRKWSQ LEEETLEKAV  300
NKFGIGNWKL MLNAHKDVFE RRTDGDLKDK WRNMRRCRSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3343860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-20TRF-like 5