PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3331700.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 451aa    MW: 51399.8 Da    PI: 6.8248
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3331700.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix673.9e-21119216185
         trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 
                      +Wt++ v +L+++++ ++++   g+            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++t ++++++ ++
  Lj1g3v3331700.1 119 KWTDNIVGLLVAVVSCVDDDGTIGAgmerakrkygalQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTcCQVVENPAL 212
                      7**************7777777654455666778888**********************************************76899999999 PP

         trihelix  82 fdql 85 
                      +d++
  Lj1g3v3331700.1 213 LDSM 216
                      9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-16117243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNNSGLGGGF LAGPSGGILD LESPFRRHQQ TQLGHPSVTG QQHMNVMSGL DNDHPIGLVE  60
VKSLNAALNF GKGKAVALCN HVNINDLSED DELGYAEDGN CEHLDGGKSK KGSTWQRMKW  120
TDNIVGLLVA VVSCVDDDGT IGAGMERAKR KYGALQKKGK WKTVSKIMIS KGCHVSPQQC  180
EDKFNDLNKR YKRLNEILGR GTCCQVVENP ALLDSMPNLS AKMKDAVRKI LSSKHLFYKE  240
MCAYHNGQRL PNSYDLDLHG YSLEHGRDSR DNNGSEDEAE DNNESEDDGV DNEININARG  300
DGGRMEELCD RNKQSEEDGH FWPRSVRMDK FQVEMDKIFQ DPAKPLWEQR EWIKMQLLQL  360
QEENVGYQAQ ALELEKQRFK WLRYCSKKDR ELEKLRLENK KMKLENEHRI LKLKQKEHET  420
DCNRSEMSLD PASHGINRPQ RREHINLARQ Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3331700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486956.10.0uncharacterized protein LOC101493778 isoform X1
TrEMBLA0A1S2XBW10.0A0A1S2XBW1_CICAR; uncharacterized protein LOC101493778 isoform X1
STRINGXP_004486956.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-85sequence-specific DNA binding transcription factors