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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj1g3v3317390.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
LBD |
Protein Properties |
Length: 316aa MW: 34117.4 Da PI: 8.6497 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj1g3v3317390.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 100 | 2.2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q
Lj1g3v3317390.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQ 97
6********************************************************************************************* PP
DUF260 90 lkaelallke 99
+++e++l ++
Lj1g3v3317390.1 98 AAVEAVLKGA 107
****998766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNSGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PITSEAAASG 120 RGPPLKAYDI RHVSRDENSA ASNETQQQRV KTRSRVKRSV AKLKPAGEEK NGGKRAESCS 180 AEPVEEARGG AGRVGWTGEV LNRSGSHDHE SSLSHQSEAA NAAAEGESKE SESIVSVETA 240 ENSVLFRNEP ESNRKRVDRT GESSEDHVGL ELTLGFEPAR VHHVVPVKKR RIELKGFGGS 300 AENGSCKMEL GLQLPA
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009660 | 0.0 | AP009660.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT23D08, TM0220, complete sequence. |