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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj1g3v3116640.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
TCP |
Protein Properties |
Length: 365aa MW: 40968.3 Da PI: 7.7099 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj1g3v3116640.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 151.2 | 6.7e-47 | 111 | 252 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssas....n 84
++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL+ ++++ai el +++ s+++++ + ++ +
Lj1g3v3116640.1 111 PAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRSKHSDNNNStgacaadG--DGD--GDddsfS 200
68**************************************************************6666655544435331..211..1111212 PP
TCP 85 sssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
sss++ + + k+ +++k+++ +++++kesr+karararert++km+ ++++
Lj1g3v3116640.1 201 SSSSEDEVVSVKRAQKEKEPSGVQAKMKESREKARARARERTSNKMCPETEN 252
22235555556899999999999************************98765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MFPNSSYPYP YFPSSSSSSP SPYPPFNFLN PGNASTNNIF LHDPPPLPSV PYTNNTTNTH 60 HHHAPPTCSE TFTNWALADA MLKQENLTGG PHHHYNLSNF LTRKLPAAKK PAKKDRHSKI 120 HTSQGLRDRR VRLSIEIARK FFDLQDMLGF DKASNTLEWL FSKSNKAIEE LFRSKHSDNN 180 NSTGACAADG DGDGDDDSFS SSSSEDEVVS VKRAQKEKEP SGVQAKMKES REKARARARE 240 RTSNKMCPET ENPQMQLHQF SSEFQPHQEL HRDDDFKVFE ESIVIKRKLK QSLMSSSHHH 300 QNQNIGIPKE ASFNNNNNSE CPSSFPMSPN WDASGATPRS NICAIASVNL STGLQIFGKS 360 WEECT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ202475 | 0.0 | DQ202475.1 Lotus corniculatus var. japonicus CYC1 mRNA, complete cds. |