PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3078240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 341aa    MW: 38312.3 Da    PI: 5.7889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3078240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-164796255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+e E+rRR +iN++f+ L++l+P++    ++K +Ka+ L ++++Y++ Lq
  Lj1g3v3078240.1 47 RSKHSETEQRRRIKINERFQVLKDLIPQN----DQKRDKASLLLEVIQYVQFLQ 96
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-2245116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7364595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-1846124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-1547100No hitNo description
PfamPF000102.3E-134796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1351101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MARSAKGHQD ELDDDNDEDL FTENTSSSLN KEKVDEPTKG KRVNPHRSKH SETEQRRRIK  60
INERFQVLKD LIPQNDQKRD KASLLLEVIQ YVQFLQEKLQ IYEQSHEGWN QEPTKLIPWR  120
NHHGPAEHTT DPSQAIQNGS VIAKNNDISS LLPQNVQNPI ESDFSTTTIQ KGHTPCSATE  180
KVPMTKQMRL DVFDPVVNSG LVTQHVLEPL SNAGIPSHTE PQVWLSKPNK DKYIVPDNTL  240
KEQEELTIES GSDSISNAYS QRILDTLTQA LQCSGVDLSQ ASVSVQIDVG RRSNSGLTPS  300
TYSSKGHQNQ FLNNQGMACS GGDYCSEDSE QSQKRLRREA S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.183310.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3078240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1411480.0BT141148.1 Lotus japonicus clone JCVI-FLLj-12J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352302.10.0transcription factor BIM2
TrEMBLI3SL000.0I3SL00_LOTJA; Uncharacterized protein
STRINGGLYMA08G28010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-56BES1-interacting Myc-like protein 2