PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj1g3v2883900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 38273 Da PI: 5.9345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 164 | 210 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + + L +P + kK +K+ +L++A++Y k+Lq Lj1g3v2883900.1 164 HHIMAERKRRKELTQNIIALSATIPGL-----KKTDKVYVLREAINYTKQLQ 210 599************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.19E-8 | 155 | 214 | No hit | No description |
PROSITE profile | PS50888 | 13.236 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-14 | 164 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-14 | 164 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-7 | 165 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MAHLLENLVS HMEMDDDIFN QSDNSFDEQG FLREILQLPD FSPQSDETSS PCPYFKIQNN 60 ISVDGVTSPP NSISTLSLEE TGFERNDPLH KSHSSNSIMS LENNLNSPTT YLLSFDKSSV 120 EQITHESSPD HNSVLRSNNR TRGSELTPGM HQATKKVRRS GTPHHIMAER KRRKELTQNI 180 IALSATIPGL KKTDKVYVLR EAINYTKQLQ ERVKELENQN RDKNVDSATF TMKSQDSSNK 240 STTYCETNRE SLPIGVKARV LEKEVNVGIH CEKQKDIVHN IYVLLEKIHL SVTCSSVLPF 300 GTSLIINIIA QMDDEYNMSI DELVKNLKEY MLEACGVQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 169 | 174 | RKRRKE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj1g3v2883900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027353406.1 | 1e-119 | transcription factor bHLH18-like | ||||
TrEMBL | A0A1S2XQD2 | 5e-99 | A0A1S2XQD2_CICAR; transcription factor bHLH18-like isoform X1 | ||||
STRING | XP_004492885.1 | 1e-100 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14947 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-38 | bHLH family protein |