PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2372410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | G2-like | ||||||||
Protein Properties | Length: 351aa MW: 39518.1 Da PI: 8.1147 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 66 | 119 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Lj1g3v2372410.1 66 PRLRWTPDLHLRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 119 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.088 | 62 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-29 | 62 | 120 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-14 | 65 | 120 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-23 | 66 | 121 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 67 | 118 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDLRVEERDD SECSKTSPSK EDGCEMSEED ESKQNTNNNG GSSSNSTVEE NDKKGSVRPY 60 VRSKLPRLRW TPDLHLRFLH AVQRLGGQER ATPKLVLQLM NIKGLSIAHV KSHLQMYRSK 120 KISDTSQESG DRNVYNLSQL PMLQGYNPSQ SSSYRCGYGD ASFAMYENML HRPFMGRGSA 180 DKSMAEFHGR MIESIHGINS NINWTNSTLF QVHPSNFSET STTKVHELQD KFLSFGSYGS 240 QVSLSQIDLH PSPQVKPSAQ ELMPITKPAN SVEKTLKRKV SDIDLDLDLS LKLSSRNQES 300 IEDHKVDSNL SLSLFSQSST SSYLSRRLKE TPDFSTEQRK KRASNALDLS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-17 | 67 | 121 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 67 | 121 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 67 | 121 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 67 | 121 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 67 | 121 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2372410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 6e-57 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602682.1 | 1e-144 | putative two-component response regulator ARR21 isoform X2 | ||||
TrEMBL | K7MTM6 | 1e-142 | K7MTM6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G43550.2 | 1e-140 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 7e-53 | G2-like family protein |