PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2372350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 18946.6 Da PI: 8.4834 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.6e-10 | 45 | 85 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P K++ +++Le+A++Y+k L Lj1g3v2372350.1 45 ARERRHRISDRFKVLQSMVPGG-----SKMDTVSMLEEAIHYVKFL 85 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-14 | 41 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 42 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.68E-13 | 42 | 89 | No hit | No description |
Pfam | PF00010 | 3.2E-7 | 45 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
METSPACKPT ISAGSSSKSK EKKGGVKKTT KREVKLSTDP QSVAARERRH RISDRFKVLQ 60 SMVPGGSKMD TVSMLEEAIH YVKFLKTQIW LLHQTMINFV DDHVSSSPAI MSFPGWEHFP 120 NEHNISLQQN PSLSVDLDSM QSLPQLPLDQ FFFQGEEDAT MKYSPAYN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2372350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140229.1 | 6e-56 | hypothetical protein PHAVU_008G095100g | ||||
Swissprot | Q9M041 | 2e-32 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | V7B5U7 | 1e-54 | V7B5U7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140229.1 | 2e-55 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 4e-34 | APRATAXIN-like |
Publications ? help Back to Top | |||
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