PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2372350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 168aa    MW: 18946.6 Da    PI: 8.4834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2372350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-104585954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r RR+ri ++f  L++++P        K++ +++Le+A++Y+k L
  Lj1g3v2372350.1 45 ARERRHRISDRFKVLQSMVPGG-----SKMDTVSMLEEAIHYVKFL 85
                     699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2053685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-124291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-124294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-134289No hitNo description
PfamPF000103.2E-74585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
METSPACKPT ISAGSSSKSK EKKGGVKKTT KREVKLSTDP QSVAARERRH RISDRFKVLQ  60
SMVPGGSKMD TVSMLEEAIH YVKFLKTQIW LLHQTMINFV DDHVSSSPAI MSFPGWEHFP  120
NEHNISLQQN PSLSVDLDSM QSLPQLPLDQ FFFQGEEDAT MKYSPAYN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2372350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140229.16e-56hypothetical protein PHAVU_008G095100g
SwissprotQ9M0412e-32BH140_ARATH; Transcription factor bHLH140
TrEMBLV7B5U71e-54V7B5U7_PHAVU; Uncharacterized protein
STRINGXP_007140229.12e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-34APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]