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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2296480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9660.79 Da PI: 9.0882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 16 | 62 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W++ +l+ +a +++ + +W +++ +g g++ +++k ++ + Lj1g3v2296480.1 16 TWSPKQNKLFERALAKYDEDtpeRWQNVSKAVG-GKSVEEVKRHYERL 62 7********************************.***********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.436 | 12 | 67 | IPR017884 | SANT domain |
SMART | SM00717 | 5.9E-9 | 13 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.71E-12 | 15 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-7 | 16 | 63 | No hit | No description |
Pfam | PF00249 | 1.1E-7 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-5 | 16 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MASSSMSKQK ACDSSTWSPK QNKLFERALA KYDEDTPERW QNVSKAVGGK SVEEVKRHYE 60 RLLEDLKHIE SGHVPFPTYK STTSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-29 | 17 | 82 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2296480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004546 | 1e-141 | AP004546.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43N05, TM0178, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540679.1 | 1e-44 | protein RADIALIS-like 4 | ||||
Refseq | XP_028194174.1 | 1e-44 | protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 3e-31 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A445HKP9 | 2e-43 | A0A445HKP9_GLYSO; Protein RADIALIS-like 1 | ||||
TrEMBL | K7LSY9 | 2e-43 | K7LSY9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G04680.2 | 4e-44 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-33 | RAD-like 1 |
Publications ? help Back to Top | |||
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