PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v2295200.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 783aa MW: 86841.9 Da PI: 5.6246

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v2295200.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.7	2.3e-28	593	643	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+le+l++yF +++kdAAk++gvc+T+LKr CRq+GIkRWP+Rkik++ Lj1g3v2295200.3 593 DKTITLEVLRQYFPGSLKDAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKKV 643 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.167	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-24	595	643	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MGDGAVTTTS AAMMEAPTNE TSMDFEYMSD LLLDGCWLEA SADGSNFLLQ QSPPFSSPLF 60 DPSFSWPALE TNEPTHVEDQ HESQEAPLGN TQLVSQSQNM VNVVDGRYNN QSETETHSVV 120 EGTSDGVKRW WIAPTCSPGL GPSIMEKLIR ALKWIKQFNW NKDMLIQIWV PVPRGDRPIL 180 SANNLPFSLD SGSENLARYR EISEGFQFSA EEDSKELVPG LPGRVFRDKV PEWTPDVRFF 240 RSDEYPRVEH AREFDICGTL AVPIFEQGSR TCLGVIEVVM TTQQINYVPQ LESVCKALEV 300 VDLTSLKHSS IQNAKQARDK SYEAALPEIQ EVLRSACHMH KLPLAQTWVS CFQQGKDGCR 360 HSEDNYLHCI SPVEQACYVG DPSVRFFHEA CMEHHLLKGQ GVAGKAFMIN QPFFSTDITM 420 LSKTDYPLSH HARLFGLRAA VAIRLRSIYS SADDYVLEFF LPVNCNDSEE QKNMLISLSI 480 IIQRCCRSLR VITDKELERT SSSVEVMALE DSGFARTVKW SEPQHITSVA SLEPEEKSSE 540 TVGGKFSDLR EHQEDSILKG NIECDRECSP FVEGNLSSVG ISKTGEKRRA KADKTITLEV 600 LRQYFPGSLK DAAKNIGVCT TTLKRVCRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVQGA 660 SGASFKIDSF YSNFPDLASP NLSGASLVSA LNQSENPNSL SIQPDLGPLS PEGATKSLSS 720 SCSQGSLSSH SCSSMPEQQP HTSDVACNKD PVVGKDSADV VLKRIRSEAE LKSHSENKAK 780 LFP

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MGDGAVTTTS AAMMEAPTNE TSMDFEYMSD LLLDGCWLEA SADGSNFLLQ QSPPFSSPLF  60
DPSFSWPALE TNEPTHVEDQ HESQEAPLGN TQLVSQSQNM VNVVDGRYNN QSETETHSVV  120
EGTSDGVKRW WIAPTCSPGL GPSIMEKLIR ALKWIKQFNW NKDMLIQIWV PVPRGDRPIL  180
SANNLPFSLD SGSENLARYR EISEGFQFSA EEDSKELVPG LPGRVFRDKV PEWTPDVRFF  240
RSDEYPRVEH AREFDICGTL AVPIFEQGSR TCLGVIEVVM TTQQINYVPQ LESVCKALEV  300
VDLTSLKHSS IQNAKQARDK SYEAALPEIQ EVLRSACHMH KLPLAQTWVS CFQQGKDGCR  360
HSEDNYLHCI SPVEQACYVG DPSVRFFHEA CMEHHLLKGQ GVAGKAFMIN QPFFSTDITM  420
LSKTDYPLSH HARLFGLRAA VAIRLRSIYS SADDYVLEFF LPVNCNDSEE QKNMLISLSI  480
IIQRCCRSLR VITDKELERT SSSVEVMALE DSGFARTVKW SEPQHITSVA SLEPEEKSSE  540
TVGGKFSDLR EHQEDSILKG NIECDRECSP FVEGNLSSVG ISKTGEKRRA KADKTITLEV  600
LRQYFPGSLK DAAKNIGVCT TTLKRVCRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVQGA  660
SGASFKIDSF YSNFPDLASP NLSGASLVSA LNQSENPNSL SIQPDLGPLS PEGATKSLSS  720
SCSQGSLSSH SCSSMPEQQP HTSDVACNKD PVVGKDSADV VLKRIRSEAE LKSHSENKAK  780
LFP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5884	0.0	pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v2295200.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ579910	0.0	AJ579910.1 Lotus corniculatus var. japonicus mRNA for NIN-like protein 1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027354742.1	0.0	protein NLP4-like isoform X1
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	Q7X9C1	0.0	Q7X9C1_LOTJA; NIN-like protein 1
STRING	GLYMA06G02030.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Publications ? help Back to Top
Schauser L,Wieloch W,Stougaard J Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851]