PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj1g3v2113670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9865.01 Da PI: 9.6014 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 3 | 48 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT eE ++ da + +G++ +W +a+ +g g++ ++k + + Lj1g3v2113670.1 3 WTREENRRFEDALAVYGPEdpnRWQHVANAVG-GKSVDEVKRQYEVL 48 *****************99*************.********999765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 13.094 | 1 | 53 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 4.41E-12 | 2 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 3 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 3 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-7 | 3 | 49 | No hit | No description |
SMART | SM00717 | 1.1E-5 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 84 aa Download sequence Send to blast |
MGWTREENRR FEDALAVYGP EDPNRWQHVA NAVGGKSVDE VKRQYEVLKE DVKRIERDQV 60 PFPRYRGSAS GINEHKRLKN LNVQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-22 | 3 | 84 | 11 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj1g3v2113670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT149275 | 1e-136 | BT149275.1 Lotus japonicus clone JCVI-FLLj-11E23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356235.1 | 1e-42 | protein RADIALIS-like 6 | ||||
Swissprot | F4JVB8 | 5e-25 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | I3T977 | 6e-54 | I3T977_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA04G03360.1 | 3e-39 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-27 | RAD-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|