PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2098310.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 336aa    MW: 38258.1 Da    PI: 4.3228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2098310.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11174217654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Lj1g3v2098310.1 174 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 217
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-15172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9174217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15175229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-4175217No hitNo description
CDDcd048735.51E-4262303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELYDQDFLD ELMALRRETW ETNPNTEENQ FFSNGFSFDS FDQNSLGYLP NSSQVPQSYN  60
NDYTFNEIYG SLLEESSSSA PPQVMDSYYN YSLDTPFNIP PCPLPKDFPL SMMEEEDPGL  120
LGEELQNMEL QTTCKMEPAT QSPEPEMPVF NMGGVGLERK NRAKKVQGQP SKNLMAERRR  180
RKRLNDRLSM LRAIVPKISK MDRTSILGDT IDYMKELLDK INNLQQEVEV DSNMAGIFKD  240
VKPNEILVRN SPKFEVERNV DTRVEICCAG KPGLLLSTVN TLEALGLEIQ QCVISCFNDF  300
TMQASCSEEL ERRTTLSSED IKQALFRSAG YGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2098310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354022.10.0transcription factor bHLH93-like
SwissprotQ9LSL18e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445K7300.0A0A445K730_GLYSO; Transcription factor bHLH93
TrEMBLI1K9L10.0I1K9L1_SOYBN; Uncharacterized protein
STRINGGLYMA06G09670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]