PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2063230.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CPP
Protein Properties Length: 375aa    MW: 41695.8 Da    PI: 8.9194
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2063230.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.4e-15138176241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ +
  Lj1g3v2063230.2 138 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCLNCHNNVD 176
                      89**************************.********986 PP
2TCR52.59.6e-17222261140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN+e
  Lj1g3v2063230.2 222 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNSE 261
                      589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-17137177IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.845138262IPR005172CRC domain
PfamPF036386.3E-12139174IPR005172CRC domain
SMARTSM011141.0E-19222263IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13225260IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEQCETTLSL APPRKSARQL DFAAVCGGPA HLKLPPPPPP VAQLLLPSIH HLPPSHLELE  60
LHPPGQRPWF YSPPQVQQQR TMQSPVMAQL QAPPPQLVSP VRLLPHPTPV KRLQAMREES  120
PRSHPRNNVE LKDSTPKKQK QCNCKNSRCL KLYCECFAAG IYCDGCNCLN CHNNVDNEAA  180
RQEAVGITLE RNPNAFKPKI ASSPQEPRYS KVDVPEIQVI GKHNKGCHCK KSGCLKKYCE  240
CFQANILCSE NCKCMDCKNS EGSTERRAFF HEEYNLVPPK QAVNAVTSGA VRSFSYGPHI  300
TPKKRKIQEI FSGKSAVDQT VSMTSQYQQE IDPIASSPSS LSASVVSDAN TRTSGPSSST  360
YSIGPFWRMS FRHRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-291302712132Protein lin-54 homolog
5fd3_B5e-291302712132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2063230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096740.0AP009674.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT04O06, TM0487, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356876.11e-175protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD12e-93TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K3NLP31e-168A0A2K3NLP3_TRIPR; Lin-54-like protein
STRINGGLYMA04G08670.21e-164(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-91Tesmin/TSO1-like CXC domain-containing protein