PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1841220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 229aa    MW: 26388.9 Da    PI: 8.7663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1841220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12756255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+Wv+eIr+p        +r++l  f tae+Aa+ +++a++ + g
  Lj1g3v1841220.1  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLWAFLTAEGAARGYDEAARLMCG 56
                     69******9.**********8.....556**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-28666No hitNo description
SuperFamilySSF541712.68E-15766IPR016177DNA-binding domain
PROSITE profilePS5103218.663764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-28764IPR001471AP2/ERF domain
SMARTSM003807.7E-32770IPR001471AP2/ERF domain
PfamPF008475.4E-6756IPR001471AP2/ERF domain
PRINTSPR003674.8E-7819IPR001471AP2/ERF domain
PRINTSPR003674.8E-73046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPILKT RIWLWAFLTA EGAARGYDEA ARLMCGARAR  60
TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS MPEPQRAADS PNVANTSNIP  120
MKNGEIEEML AHKRPKEEQE SEGNWVLKKV KAESAHNAMF EYPMTPMQTD VNTQFKIKSE  180
RNSYYGSDES RFTLQLRPLE EDHNHIEQMI EELLHYGSIE LCSYPTQAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.221240.0protoplast
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1841220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419542e-83BT141954.1 Medicago truncatula clone JCVI-FLMt-6M2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356544.13e-93protein PPLZ02-like
SwissprotQ94AW56e-62ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A151TTD72e-90A0A151TTD7_CAJCA; Protein PPLZ02
STRINGXP_007136971.12e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]