PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C3H

Protein Properties

Length: 201aa MW: 23337.1 Da PI: 7.9913

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1784260.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.3e-09	79	100	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C++ ++ G+C++Gd+C+FaHg Lj1g3v1784260.1 79 TPCPDLRK-GYCNRGDSCHFAHG 100 68****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.3E-7	71	102	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-5	75	101	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.88E-5	75	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.911	76	102	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-7	79	100	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	16	110	133	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MLQIRNLQIP DWDHDTLSVN AFATTPTEDF SSTDHFRMFD FKVNLCQRGR PHDWTDCPYA 60 HPGEKARRRD PRKHHYSATP CPDLRKGYCN RGDSCHFAHG VFECWLHPSR YRTQPCKDGT 120 FCRRRVCFFA HTANQLRVLN HEHVLSSPTS VLNSSSTLST KSFRYGVVSA FSVDEIVRSM 180 RNVQLDEGSE PDFEWISELV K

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.11618	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269\|PubMed:16778011}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1784260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027355694.1	3e-75	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82307	5e-64	C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
Swissprot	Q9FU27	2e-63	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2Z6N5E3	1e-72	A0A2Z6N5E3_TRISU; Uncharacterized protein
STRING	AES73358	6e-73	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	5e-63	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]