PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1548920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 582aa    MW: 62928.9 Da    PI: 8.8055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1548920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-10203252148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      r+ W++eEd +l  av+++G g+W+t a+  +   +R++ q+  rw +++
  Lj1g3v1548920.1 203 RKQWSEEEDMQLRAAVQRFGEGNWATMAKGDNfpIKRSATQLAQRWSTLR 252
                      789*************************98888866**********8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.559198256IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-13199256IPR009057Homeodomain-like
SuperFamilySSF466891.65E-11201255IPR009057Homeodomain-like
SMARTSM007171.4E-10202254IPR001005SANT/Myb domain
PfamPF002493.1E-9203251IPR001005SANT/Myb domain
CDDcd116601.40E-13204253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MPTSGTKCNK LSFSEEDAAT LTERYDTTTV LTLLQEIANY PHTKIDWNEL VKKTSTGISN  60
AREYQMLWRH LAYRDALPEK FEDGAQPLDD DSDLDCELEA LPPVSEESAL EAAACVKVMV  120
ASCTFSESTP TSSTIEAPLT IHVPVCHSSR TPNETSQPSN LMERTTMTFP VTVPRQTLPT  180
ISSTDGIETK GNIGGNLASK RKRKQWSEEE DMQLRAAVQR FGEGNWATMA KGDNFPIKRS  240
ATQLAQRWST LRKKDCSANS GTNLPNPQYT TAEQLATRHS LSLALDMPFK KLTTPGISAP  300
VRTSASIKNQ VQPCTSKVVS TVQSSSVPPQ HPSQQVLLGS AKSKLKSENP VSKCNPVSDP  360
VLKSTTIHSG AKVVPRSIAV SQFKGVQVRN MVGSVPAGSC LTKTPISAGL PSDIKDKHVS  420
SGVGGALPKQ EVNPTKDCRV SNVGSIPKEK AREVGTPVVT ARCQVDGNPD KGRVDVVKPK  480
SMPPIKVAGE KISQPKAVPQ NTGGCVEQGS VKNSNFTPKT ETTENENGKL HKEGQDSEQD  540
KRKNSISGSS DNQNTNVKHV NLPTQDQCKQ NLEPPKIVKS EN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.183240.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1548920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1463090.0BT146309.1 Lotus japonicus clone JCVI-FLLj-24M22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355429.10.0uncharacterized protein LOC113865219
TrEMBLK7KJ580.0K7KJ58_SOYBN; Uncharacterized protein
STRINGGLYMA06G10170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-65MYB_related family protein