PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1548920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 582aa MW: 62928.9 Da PI: 8.8055 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.4e-10 | 203 | 252 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+ W++eEd +l av+++G g+W+t a+ + +R++ q+ rw +++ Lj1g3v1548920.1 203 RKQWSEEEDMQLRAAVQRFGEGNWATMAKGDNfpIKRSATQLAQRWSTLR 252 789*************************98888866**********8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.559 | 198 | 256 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-13 | 199 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-11 | 201 | 255 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 202 | 254 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-9 | 203 | 251 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.40E-13 | 204 | 253 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MPTSGTKCNK LSFSEEDAAT LTERYDTTTV LTLLQEIANY PHTKIDWNEL VKKTSTGISN 60 AREYQMLWRH LAYRDALPEK FEDGAQPLDD DSDLDCELEA LPPVSEESAL EAAACVKVMV 120 ASCTFSESTP TSSTIEAPLT IHVPVCHSSR TPNETSQPSN LMERTTMTFP VTVPRQTLPT 180 ISSTDGIETK GNIGGNLASK RKRKQWSEEE DMQLRAAVQR FGEGNWATMA KGDNFPIKRS 240 ATQLAQRWST LRKKDCSANS GTNLPNPQYT TAEQLATRHS LSLALDMPFK KLTTPGISAP 300 VRTSASIKNQ VQPCTSKVVS TVQSSSVPPQ HPSQQVLLGS AKSKLKSENP VSKCNPVSDP 360 VLKSTTIHSG AKVVPRSIAV SQFKGVQVRN MVGSVPAGSC LTKTPISAGL PSDIKDKHVS 420 SGVGGALPKQ EVNPTKDCRV SNVGSIPKEK AREVGTPVVT ARCQVDGNPD KGRVDVVKPK 480 SMPPIKVAGE KISQPKAVPQ NTGGCVEQGS VKNSNFTPKT ETTENENGKL HKEGQDSEQD 540 KRKNSISGSS DNQNTNVKHV NLPTQDQCKQ NLEPPKIVKS EN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.18324 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1548920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146309 | 0.0 | BT146309.1 Lotus japonicus clone JCVI-FLLj-24M22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027355429.1 | 0.0 | uncharacterized protein LOC113865219 | ||||
TrEMBL | K7KJ58 | 0.0 | K7KJ58_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G10170.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-65 | MYB_related family protein |