PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1525930.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 305aa    MW: 34114.3 Da    PI: 5.0781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1525930.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13118169155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Lj1g3v1525930.2 118 QRMTHIAVERNRRKQMNEYLSALRSLMPSS---YVQRGDQASIIGGAINFVKELE 169
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.83E-15116173No hitNo description
Gene3DG3DSA:4.10.280.106.8E-14116173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.586117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17117190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAFEAVVFPQ DPAFTYGCKN DYFFSATTAV GAWGTNNNNY GLLQAAEEEE EKKLLEIIIN  60
NNNMDQEQNL HSNNWDSSSH TSPEACTFDQ SSPTPFSSSR RKRRRTKSAK NMEEIENQRM  120
THIAVERNRR KQMNEYLSAL RSLMPSSYVQ RGDQASIIGG AINFVKELEQ LLQSMEGQKK  180
TDQPGSSPLP PFAEFFVFPQ YTTRAATHSN DTNMGVADIE VTLVDSHANL KILSKKRRGN  240
LMKIIGGIQS LSLTILHLNV TTVDDLVLYS VSLKVEEECQ LSTVDEIAAA VNQLLSMVGE  300
EVTFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104RKRRR
2100105RKRRRT
3118129RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1525930.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544814.11e-126transcription factor bHLH96
RefseqXP_028198704.11e-126transcription factor bHLH96-like
SwissprotQ9C7T44e-84BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0B2R0A51e-126A0A0B2R0A5_GLYSO; Transcription factor bHLH96
STRINGGLYMA14G35560.11e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]