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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj1g3v1452940.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
ARF |
| Protein Properties |
Length: 456aa MW: 50956.7 Da PI: 8.3868 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj1g3v1452940.1 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 76 | 4.2e-24 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+k+lt sd++++g +++ +++a+e+ + k++ +++l +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +
Lj1g3v1452940.1 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGE 238
99*****************************63.4445569************************************************..449 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++el+v+v+r+
Lj1g3v1452940.1 239 NGELRVGVRRA 249
999*****996 PP
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| 2 | Auxin_resp | 115.7 | 3.9e-38 | 274 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk++++vGmRfkm+fe+e+++e+r++Gtvvg++d+d+ +W++S+Wr+Lk
Lj1g3v1452940.1 274 AWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKTNYTVGMRFKMRFEGEEAPEQRFTGTVVGIEDVDSKSWRDSRWRCLK 356
79*******************************************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MASSEVAMKG NCPNHGDGGR SVTTEGQNGH SASTARDAEA ALYRELWHAC AGPLVTVPRE 60
GERVFYFPQG HIEQVEASTN QVADEHMPVY DLPSKILCRV INVQLKAEPD TDEVFAQVTL 120
LPEPNQDENA VEKEPPPPPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS 180
KQPPTQELAA KDLHGNEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG 240
ELRVGVRRAM RQQGNVPPSV ISSHSMHLGV LATAWHAILT GTIFTVYYKP RTSPAEFIVP 300
YDQYMESLKT NYTVGMRFKM RFEGEEAPEQ RFTGTVVGIE DVDSKSWRDS RWRCLKVRWD 360
ETSNTPRPDR VSPWKIEPSL APPALNPLSM PRPKRPRSIA VLSSPDSSVL TREASSKVSV 420
DPLPANGFPR VLQGQEFSTL RGNIARLRSL LLGHLQ
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
| Publications
? help Back to Top |
- Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
PLoS ONE, 2012. 7(8): p. e42839
[PMID:22916167] - Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
Mol. Gen. Mikrobiol. Virusol., 2013.
[PMID:24003511] - Li C, et al.
Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
PLoS ONE, 2014. 9(4): p. e94830
[PMID:24756087] - Lyons R, et al.
Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
PLoS ONE, 2015. 10(4): p. e0121902
[PMID:25849296] - Roodbarkelari F,Du F,Truernit E,Laux T
ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
BMC Biol., 2015. 13: p. 74
[PMID:26358077] - Meng LS,Wang ZB,Yao SQ,Liu A
The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
J. Cell. Sci., 2015. 128(21): p. 3922-32
[PMID:26395398] - Zhao S,Zhang ML,Ma TL,Wang Y
Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
Plant Cell, 2016. 28(12): p. 3005-3019
[PMID:27895227] - Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
J Integr Plant Biol, 2017. 59(1): p. 30-43
[PMID:28074634] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
Plant Cell Rep., 2017. 36(6): p. 843-858
[PMID:28255787] - Sanz-Fernández M, et al.
Screening Arabidopsis mutants in genes useful for phytoremediation.
J. Hazard. Mater., 2017. 335: p. 143-151
[PMID:28441590] - Zhang M,Hu X,Zhu M,Xu M,Wang L
Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
Sci Rep, 2017. 7(1): p. 1395
[PMID:28469131] - Guan C, et al.
Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
Curr. Biol., 2017. 27(19): p. 2940-2950.e4
[PMID:28943086] - Liu Z, et al.
ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
Plant Cell Physiol., 2018. 59(1): p. 179-189
[PMID:29145642] - Sarkar Das S, et al.
Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
Sci Rep, 2018. 8(1): p. 1233
[PMID:29352229]
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