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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1306810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24829.9 Da PI: 5.1772 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.2 | 5.7e-18 | 17 | 63 | 80 | 128 |
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg dk++ + ++ g+kk Lvfy g+apkg kt+W+mheyrl Lj1g3v1306810.1 17 AGYWKATGADKPIGK--PKALGIKKALVFYVGKAPKGIKTNWIMHEYRL 63 7************98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.915 | 1 | 89 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.24E-22 | 13 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-9 | 17 | 63 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVLLFSERPE VSEWFPAGYW KATGADKPIG KPKALGIKKA LVFYVGKAPK GIKTNWIMHE 60 YRLANVDRSA GKKSNLRLDD WVLCRIYNKK GKIEKYNTPT PKFSGLGEVH DSYDEHEHER 120 KPEIHDQLYM EASDSVPRLH TDSSGSEHAA SPDVTCDKEV QSEPQWNNEL EFKLDDGTFD 180 FQFSFLDDNN MSVDEYQLNQ LSPLQDMFMY LEKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-28 | 18 | 95 | 94 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25794 | 0.0 | protoplast |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1306810.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145992 | 0.0 | BT145992.1 Lotus japonicus clone JCVI-FLLj-17M21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027336123.1 | 1e-101 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 4e-63 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B3IX39 | 1e-145 | B3IX39_LOTJA; Transcription factor NAC | ||||
STRING | GLYMA04G38560.1 | 4e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-65 | NAC family protein |