PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v1304790.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 291aa MW: 32906.5 Da PI: 4.4701

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v1304790.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.1	9.9e-38	2	113	17	128
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 ++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k +k+++ +wyfF++r ky+tg + nrat+ gyWk+tgkd++v + k+++vg+ +tLvf Lj1g3v1304790.2 2 YFLKRKILGRKFPF-DVIAELDIYKYAPWDLPdKsVLKTGDLKWYFFCPRGMKYSTGGKLNRATEFGYWKTTGKDRSVEH-KNQVVGMIRTLVF 93 89**********.99**********96446677888*********************************9.999****** PP NAM 109 ykgrapkgektdWvmheyrl 128 + grapkg +tdWvmhe+r+ Lj1g3v1304790.2 94 HIGRAPKGDRTDWVMHEFRI 113 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-48	1	136	IPR003441	NAC domain
PROSITE profile	PS51005	44.551	1	136	IPR003441	NAC domain
Pfam	PF02365	3.0E-15	2	113	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MYFLKRKILG RKFPFDVIAE LDIYKYAPWD LPDKSVLKTG DLKWYFFCPR GMKYSTGGKL 60 NRATEFGYWK TTGKDRSVEH KNQVVGMIRT LVFHIGRAPK GDRTDWVMHE FRIEHKDLAD 120 KGIPQDSYVI CRVFQKEGPG PRNGAQYGKP FNEEDWDEDE EIDSKQSMPV ATTSAPGSVP 180 SCSTHPSAPN NQVDEFKEYD NTLSVNDYNG NEKVDHPDLA NNAEGGPYQD PNEIFGELGD 240 LDSLLGLGEA DLRGDPFSRG QEDECTTNEM LSTSSWFCGD GDFLELIDLD S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-37	3	137	34	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-37	3	137	34	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-37	3	137	34	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-37	3	137	34	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-36	3	137	37	169	NAC domain-containing protein 19
3swm_B	1e-36	3	137	37	169	NAC domain-containing protein 19
3swm_C	1e-36	3	137	37	169	NAC domain-containing protein 19
3swm_D	1e-36	3	137	37	169	NAC domain-containing protein 19
3swp_A	1e-36	3	137	37	169	NAC domain-containing protein 19
3swp_B	1e-36	3	137	37	169	NAC domain-containing protein 19
3swp_C	1e-36	3	137	37	169	NAC domain-containing protein 19
3swp_D	1e-36	3	137	37	169	NAC domain-containing protein 19
4dul_A	9e-37	3	137	34	166	NAC domain-containing protein 19
4dul_B	9e-37	3	137	34	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269\|PubMed:20388856}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v1304790.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502931.1	1e-144	NAC domain-containing protein 82 isoform X1
Refseq	XP_004502932.1	1e-145	NAC domain-containing protein 82 isoform X2
Refseq	XP_004502933.1	1e-145	NAC domain-containing protein 82 isoform X2
Swissprot	Q9FY82	3e-72	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A1S2YCQ9	1e-143	A0A1S2YCQ9_CICAR; NAC domain-containing protein 82 isoform X2
TrEMBL	A0A1S2YE67	1e-143	A0A1S2YE67_CICAR; NAC domain-containing protein 82 isoform X1
STRING	XP_004502931.1	1e-144	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	2e-73	NAC domain containing protein 103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]