PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1303700.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 262aa    MW: 29231.7 Da    PI: 5.9439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1303700.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08140180954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Lj1g3v1303700.1 140 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 180
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12137191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-11137185No hitNo description
SuperFamilySSF474591.44E-14140205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6141180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDTNQNATTT FTNVTNNTWN LERMKTSGGE NNMTIFHNDH QIPIGLGIWP NNYHTPSSPS  60
PSPSATTMLS SSFLSDMLGI NIEEDEGEEE DKEEDEELGA MKEMMYKIAV MQPVDIDPAA  120
IRKPKRKNVR ISDDPQSVAA RHRRERISEK IRILQRLVPG GTKMDTASML DEAIHYVKFL  180
KRQIRLLQST PNSQHHQQHP PPTPTSCNVP GFTSELFLAT TGSYWPFAPT IVLQGSTTTT  240
TSALGHGYAG DDGFKHHEVV SE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1303700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096970.0AP009697.1 Lotus japonicus genomic DNA, clone: LjT10C23, TM1709, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019436929.14e-89PREDICTED: transcription factor HEC3-like
TrEMBLC0JP180.0C0JP18_LOTJA; Putative basic helix-loop-helix protein BHLH13
STRINGGLYMA04G39210.23e-83(Glycine max)
STRINGGLYMA05G32410.26e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-46bHLH family protein