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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1301650.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 1163aa MW: 127817 Da PI: 8.9528 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 212 | 232 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa GtC++G+ C+F H Lj1g3v1301650.3 212 PCRDFAS-GTCRRGSLCNFLHH 232 8******.*************6 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 271 | 292 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H Lj1g3v1301650.3 271 EACINFAK-GRCRQGSSCKFVHH 292 68******.*************5 PP | |||||||
3 | zf-CCCH | 17.1 | 1e-05 | 367 | 387 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa G C+ G C+F+H+ Lj1g3v1301650.3 367 PCKFFAN-GNCRNGKYCRFSHD 387 7**8888.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.314 | 207 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 209 | 233 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-5 | 211 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 211 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.54 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.11 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 362 | 388 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 362 | 389 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 365 | 387 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1163 aa Download sequence Send to blast |
MSEGGRKRSS KWDLIDEPEF APGSKQMRSG RSSADVAGSN SSKWSYSEGN DELKPGKGRS 60 SKDSFSGGRD SNKDNIMNKD YRVSDATMDL DTDRSYSKNM SPLLEERKQK RRSQSPKIGW 120 GSSLRDSNKD DIMNKDYGVW DATMDLDTDR SYSKNMSPLF EERRQNRRSQ SPKSGWGRSV 180 RRSRSRSPPH GFRRDSGIND RIRTRVGGSS QPCRDFASGT CRRGSLCNFL HHDNQNPENS 240 WESKHREDGA PRYSDTHESR DHSFRSGRAN EACINFAKGR CRQGSSCKFV HHNNSDGYGK 300 VSGDELTREK EIDKRRGDSS FEQGGRHGYG KVSVDELTRE KEIDKRRGDS SFEQGGRHGP 360 NRSSDIPCKF FANGNCRNGK YCRFSHDRQA CRSPDRRSRD DRWASNPSGD HQMFDRPKMS 420 DTASPNRRLR DDRWGSDGNT ADADKVRDSL KRNDAVATSD RAKLIEHKTG NVGVTDPKFT 480 DWPTGDAWGH SLDKSRVLGE PPFLDDKKEA DHWVAENTGA NMHSSQSIGT DIWSDEGKMS 540 PDWNYRLGPS SHIEEYGQNR HGITQGGTYL ATSEHDRVQV APGHGLYQNA QSVDGLSQVI 600 SRSPPTQDKH GIMQGGACVA TSEHDRVQVT PGQGFNQNVH SVNSLHSSSG HAVGQSQVTV 660 PILPSRGVDG THNREVSTEI MDASLSQVIS RNPPTQNKHG ITQGGAYLAT SEYDRVEVAP 720 GQGFNQNAQS VNPLHSSSGH ADGQSQVTVP ILPSIGVVGG THNQEISTEK NCTVESSTMN 780 ASLSQVISRN PPTQNKNGIT QGGTYFATSE HDRVQVAPGQ GFNQNSLHSS SGYTIGQSQV 840 AVPILPSRGG ILDGTHNHEV STEKKYLAEP SIMDGGLSQV ISTPTQNMVS KEQIAQLTNL 900 SASLAHILGT GQQLPQLYAA LNSHDLKDTP SLAKTEVPSM PVSNTSINPD PAVGLPQQYD 960 PTSDSIEPNA DAKKVSAAIP ATKRIAEPAA EIPSQLPDSG RQSRGDSIKP ASSELVKSDK 1020 IIQLQPGKNF DVNKDKSGVL AAERRRNSRD AHKNTKEDGP LDNMDQPGGP DEAKKTKDVK 1080 ELRAFKFSLA DLVKELLKPA WKEGQVNKED FKTIVKKVVE KVSGTMQGSQ IPQTKEKIDQ 1140 YLSVSRTKLT KLVQAYVEKV QKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1301650.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143916 | 0.0 | BT143916.1 Lotus japonicus clone JCVI-FLLj-24I8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020203619.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X2 | ||||
TrEMBL | A0A371GLE0 | 0.0 | A0A371GLE0_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment) | ||||
STRING | XP_007137708.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4099 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-17 | C3H family protein |