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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1255850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30556.6 Da PI: 9.698 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.5e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W++++r g++R +k+c++rw +yl Lj1g3v1255850.1 22 KGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.8e-17 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Lj1g3v1255850.1 75 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.37 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-30 | 21 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-17 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.77E-12 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.928 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 75 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.58E-10 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MYWGGVMTGH MGRGFTEELW RKGPWTAEED RLLIEYVRLH GEGRWNSVSR LAGLKRNGKS 60 CRLRWVNYLR PDLKRGQITP QEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKSPSDA AEKARNRLLR KQQFHQQQQQ QQQQLLQQQQ MQQQQQQQQQ MQFNLDLKGI 180 MALLEENNSQ RVPYISQAIR QDMVNMCPNT TEEQGYLYSS AVPEASAEEI LWDGLWNMDE 240 AHGNLSVANK AGLYNLVAPF C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 22 | 124 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1255850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535980.1 | 1e-138 | transcription factor MYB2 isoform X1 | ||||
TrEMBL | A0A0R0HSY1 | 1e-136 | A0A0R0HSY1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G26681.1 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-84 | myb domain protein 305 |