PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1134110.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 276aa    MW: 30663.1 Da    PI: 6.9964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1134110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.14.7e-25145205259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD ++WrKYGqK++ +s+fprsY+rCt +   gC++ k+v+r +e+p++ +itY g H+++
  Lj1g3v1134110.1 145 DDDHSWRKYGQKDILNSQFPRSYFRCTRKhdqGCRANKQVQRIQENPDMYQITYIGFHTCK 205
                      8**************************988899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-24136205IPR003657WRKY domain
SuperFamilySSF1182902.35E-24141205IPR003657WRKY domain
SMARTSM007748.2E-35144206IPR003657WRKY domain
PROSITE profilePS5081118.739145202IPR003657WRKY domain
PfamPF031063.3E-24145205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNTMLFPESV SAKRKQVIRE LVKGREHATQ LKFLLQNLNG GSLSAKEMAA SVLRSFSVSL  60
SVITSDSLSE EAGSGGGGEV ADQNHSEDGS LVMAAAAAAS SNIGPEDSSE SCGKRIFVQA  120
TKDRRGSYKR RKSEQTRTIV SPTTDDDHSW RKYGQKDILN SQFPRSYFRC TRKHDQGCRA  180
NKQVQRIQEN PDMYQITYIG FHTCKDTPIK APEMVTFSNT WDSFLVNSHP DSNEHHDPII  240
KLECPCSGET PSDVTGNNLD HSLWSELKDF ELSKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21138205269OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.23250.0floral bud| flower| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1134110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1399930.0BT139993.1 Lotus japonicus clone JCVI-FLLj-4I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338982.11e-108LOW QUALITY PROTEIN: WRKY DNA-binding transcription factor 70-like
TrEMBLI3SHP60.0I3SHP6_LOTJA; Uncharacterized protein
STRINGGLYMA06G14720.11e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-35WRKY DNA-binding protein 70