PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v0593350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 38290.9 Da PI: 5.1008 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.6e-13 | 135 | 186 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Lj1g3v0593350.1 135 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 186 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.85E-14 | 133 | 190 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 134 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.459 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-13 | 135 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-10 | 140 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MALEAVVFPQ DPFTYNYKDY LYSLVGGNPP SEGSNWNRHE YGSFAEEEKA LLGIINSNIE 60 HNLHANWDSS TSPSVVQNVK DQCDSHSSPE ACIIDYSSPG TDNLPPSITT AATVTGRRKR 120 RCTKSAKNQE DIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYVQRGD QASIIGGAIN 180 FVKELEQLLQ CMKGRNIKTK EQQQQWHEDG SSSSPFAEFF MFPQYSTRAT SEGSTSYPNT 240 CCEATVAQNQ NRPPAAADIE VTLVDGHANI KILSKKQPGQ LVKMVLGMQS LGFIILHLNV 300 TTVEDMVLAS VSVKVEEGCE LNTVDEIAAA MNQLSSTVQE EAASFC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 146 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2216 | 1e-139 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v0593350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU928858 | 7e-38 | CU928858.2 Medicago truncatula chromosome 5 clone mth4-5i12, COMPLETE SEQUENCE. | |||
GenBank | FP016159 | 7e-38 | FP016159.1 Medicago truncatula chromosome 5 clone mth2-188h20, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544814.1 | 1e-157 | transcription factor bHLH96 | ||||
Refseq | XP_028198704.1 | 1e-157 | transcription factor bHLH96-like | ||||
TrEMBL | A0A445H790 | 1e-156 | A0A445H790_GLYSO; Transcription factor bHLH96 | ||||
TrEMBL | I1MAX1 | 1e-156 | I1MAX1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G35560.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-84 | bHLH family protein |