PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v0426840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27091.9 Da PI: 6.4019 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 134 | 181 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Lj1g3v0426840.1 134 SHSIAERARREKISERMKILQDLVPGC----NKMIGKALVLDEIINYIQSLQ 181 8*************************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.20E-11 | 128 | 185 | No hit | No description |
SuperFamily | SSF47459 | 1.26E-17 | 128 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-18 | 130 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.758 | 130 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 134 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-10 | 136 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDPPLINDST FSSAFALAEI WPRPGGGADE HSTVTQLTAA ARNHGSRIKM KNNNDSTTSE 60 DDCSKNDSGN KRIRLGGGGS TVENGGGGGL KAAEASSVAG SNNSDEQSTK PSESEPPKQD 120 YIHVRARRGQ ATDSHSIAER ARREKISERM KILQDLVPGC NKMIGKALVL DEIINYIQSL 180 QHQVEFLSMK LEAVNSRANL NPTNEGFPSK DVVTQPFDIA GVIYESQAAR GYAQGSHPGW 240 LHMQIGGGFE GAT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5742 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v0426840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140195 | 0.0 | BT140195.1 Lotus japonicus clone JCVI-FLLj-16L8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527048.1 | 1e-113 | transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 2e-73 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | I3SI98 | 1e-164 | I3SI98_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA06G20000.1 | 1e-112 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-71 | bHLH family protein |
Publications ? help Back to Top | |||
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