PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0416400.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 292aa    MW: 32082 Da    PI: 8.0267
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0416400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-1476120347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I++ + k+Rt  q+ s+ qky
  Lj1g3v0416400.1  76 PWTEEEHKLFLLGLQKVGKGDWRGISKNFVKTRTSTQVASHAQKY 120
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.26668125IPR017930Myb domain
SuperFamilySSF466891.2E-1671125IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-1772123IPR006447Myb domain, plants
SMARTSM007174.2E-1073123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-1175120IPR009057Homeodomain-like
CDDcd001672.92E-976121No hitNo description
PfamPF002492.0E-1176120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSNTAVSGAG EFMLFGVRVT VDSMRKCVSM NNLSQYEHPH DAPNNKEHAA GYASADEAPA  60
PLPVKLANPD RKRGVPWTEE EHKLFLLGLQ KVGKGDWRGI SKNFVKTRTS TQVASHAQKY  120
FLRRANLTRR RRRSSLFDIT TDTVSAAQME EEQIQHQDNM SHSCPIYPAT ATETPESSNR  180
NGYPMMPMYS MAVGSGVNSV LARNQMEKLT LGQENVEQNE VSKLACTIPA VPDHKASSSV  240
SDISSNTSSI VDPPTLSLGL SLSSDQRQKS PRHTPLHAVP CFNNEDSIIT VA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.111960.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0416400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096430.0AP009643.1 Lotus japonicus genomic DNA, clone: LjB09A03, BM2001, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329958.11e-122transcription factor MYB1R1-like
SwissprotQ2V9B06e-58MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A371F4T01e-112A0A371F4T0_MUCPR; Uncharacterized protein (Fragment)
STRINGGLYMA04G34720.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-57MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]