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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v0244390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 270aa MW: 29624.1 Da PI: 7.2582 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96 | 2.9e-30 | 61 | 117 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eC+kNhA+s GghavDGC+Efm++ g+egt +a+ CaAC+CHRnFHR+e + e Lj1g3v0244390.1 61 VVRYRECQKNHAVSFGGHAVDGCCEFMAA-GDEGTLEAVICAACNCHRNFHRKEIDGE 117 689*************************9.999********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 60 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.7E-28 | 62 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-26 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.821 | 64 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.24E-20 | 192 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 195 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.7E-24 | 207 | 264 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MEFDEQEEQD EEMGIPESPP PVPASYDPLL NSAPRSKIAE VSAPVIGRKG GSFTPPVAAG 60 VVRYRECQKN HAVSFGGHAV DGCCEFMAAG DEGTLEAVIC AACNCHRNFH RKEIDGETVA 120 SCQRQQPPPP PVHHHQYHSQ FSPYYHRGPQ HHAASGGYLH HHLTTSPTAP HRPLALPPAT 180 SGGGFSREEE DMSNPSSSGG GGGGGMKKRY RTKFTPEQKE KMLAFAEELG WRIQKHQEAA 240 VEQFCAETCV RRNVLKVWMH NNKNTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-29 | 208 | 265 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5178 | 0.0 | floral bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v0244390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004968 | 0.0 | AP004968.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43O24, TM0145, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615230.1 | 1e-116 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 7e-69 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | G7KBF3 | 1e-115 | G7KBF3_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | XP_004490406.1 | 1e-116 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-66 | homeobox protein 22 |
Publications ? help Back to Top | |||
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