PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0183020.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 90aa    MW: 10641 Da    PI: 11.9842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0183020.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-114876230
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                     +++h  +ErrRR+riN+ +++Lr+llP+ 
  Lj1g3v0183020.2 48 CQSHRDAERRRRHRINTHLSTLRSLLPNT 76
                     799************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-83878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1984690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-84876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-74976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MLPLRGFYGF ESWLDHKPAR QGNIQQSSLI NSAAELDGGR SRKSTEACQS HRDAERRRRH  60
RINTHLSTLR SLLPNTTKIR HRYWRKWLST
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0183020.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858556.18e-22PREDICTED: transcription factor bHLH106-like isoform X2
TrEMBLA0A2I4HQX02e-20A0A2I4HQX0_JUGRE; transcription factor bHLH106-like isoform X2
STRINGGLYMA02G37720.11e-20(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-06basic helix-loop-helix 32