PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0129650.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 36aa    MW: 4297.87 Da    PI: 4.7427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0129650.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.6e-09636132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg+W++++ el+++av+++G++ ++ I + ++
  Lj1g3v0129650.1  6 RGKWSKQDTELFYEAVREFGTD-FSMIQQLFP 36
                     89*******************9.****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.714136IPR017930Myb domain
PfamPF159638.5E-13336No hitNo description
Gene3DG3DSA:1.10.10.606.4E-5436IPR009057Homeodomain-like
SuperFamilySSF466891.42E-7536IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 36 aa     Download sequence    Send to blast
MDKAPRGKWS KQDTELFYEA VREFGTDFSM IQQLFP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0129650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359855.14e-17uncharacterized protein LOC113868459 isoform X1
RefseqXP_027359856.14e-17uncharacterized protein LOC113868459 isoform X2
RefseqXP_027359857.14e-17uncharacterized protein LOC113868459 isoform X3
RefseqXP_027359858.14e-17uncharacterized protein LOC113868459 isoform X4
RefseqXP_027359859.14e-17uncharacterized protein LOC113868459 isoform X5
TrEMBLA0A371IG691e-15A0A371IG69_MUCPR; Bdp1 (Fragment)
STRINGXP_004504018.15e-16(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.23e-14MYB_related family protein