PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0114040.1
Common NameCPP-L56
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CPP
Protein Properties Length: 766aa    MW: 84036.6 Da    PI: 5.9253
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0114040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.9e-16477514340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Lj1g3v0114040.1 477 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 514
                      89**********************************96 PP
2TCR512.9e-16561599139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Lj1g3v0114040.1 561 RHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNA 599
                      589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-18475516IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.188476601IPR005172CRC domain
PfamPF036381.1E-11478513IPR005172CRC domain
SMARTSM011145.6E-17561602IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11563599IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MDMDTPERNR LNTPVSKFED SPVFNYINNL SPIKTVKSVH ITQTFNSLSF SSPPSVFTSP  60
HVSCLKESRF VSRHNQFGTS KPKVSSEDVN KVHSSEEALA IHGDHDSNEP QENADRGISV  120
EDASIELSGE HTKFSVELPQ ALQYNCGSTS YDPPLRDDEA NTLLELPGEA APEVAYVQQI  180
VSIEHEVHIQ EMCQVEENGE GADCDWDSLL PNATDLLLFN SPNQAETFKN LMQKPLRSSM  240
RLGDVMSLLP QSTLSNDQNI HTVDSVVPGA EHEIEANCSE TVAINSTEPS QDTLADVDLS  300
TSNPNEKMDD KVVSVTHRGT RRRCLDFEMA SVRTKNSDGN SNASSSTTQS EVRIAANEKQ  360
LLPIKRDANS QRRMLPGIGL HLNALATFTD YKGIQQSEKF SSSGRQLSLA SSSSLQLSAS  420
LEHQNLVPVT AERELDPSEN GVQPAEDSSQ AASEDFNQNS PKKKRRKVEP AGDTEGCKRC  480
NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LQTRKQIESR NPLAFAPKVI  540
RNSDSVPEIG DDPNKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIS CRCEGCKNAF  600
GRKDGSAQAE PEEETETSNK GVMEKALQKT EIQNIEEHQD SSVAATPLRL SRPLLPLPFS  660
SKGKPPRSFV TTISGSALFT SQKLGKPNSL WSQANKHFQG VVPEDDEMPD ILHGDSSPIA  720
CIKSSSPNSK RISSPNCEMR SSPSRRGGRK LILQSIPSFP SLTTHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1748059814120Protein lin-54 homolog
5fd3_B3e-1748059814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461465KKKRR
2461466KKKRRK
3462466KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.159050.0cell culture| floral bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0114040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786450.0AB378645.1 Lotus japonicus CPP-L56 mRNA for transcription factor CPP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361304.10.0protein tesmin/TSO1-like CXC 2
TrEMBLB3IX450.0B3IX45_LOTJA; Transcription factor CPP
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-131TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]