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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lj1g3v0101540.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
TCP |
| Protein Properties |
Length: 370aa MW: 41522.1 Da PI: 7.7418 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj1g3v0101540.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 145.8 | 3e-45 | 111 | 256 | 1 | 135 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg. 88
a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ ai+el+++ ss+s+++ +++++ +
Lj1g3v0101540.1 111 ATTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQELARSkncscSSNSNNNPSNNNK---------Sl 195
579**************************************************************555441112211112222.........13 PP
TCP 89 ..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
+ +s+ k +++++ ++l+ +kesr++arararert km +++
Lj1g3v0101540.1 196 fgggdnhngtnsirGRGNSKLKWTTQRDQDVCVLQNKKESRERARARARERTFYKMLEDQR 256
3334444456777577777779**********************************88765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MFSSTSYHDS INPFPSSFPS SSYPSLPFLI DPENINNFPQ DPLVSHPFIH DSNINDAPIF 60
THDTTNLAVS VSHLLEQQDP LGGNNYASSI VPNFLRASKP AASASAAAAM ATTKKDRHSK 120
IHTSQGLRDR RVRLSSEIAR KFFDLQDMLE FDKPSNTLEW LFTKSESAIQ ELARSKNCSC 180
SSNSNNNPSN NNKSLFGGGD NHNGTNSIRG RGNSKLKWTT QRDQDVCVLQ NKKESRERAR 240
ARARERTFYK MLEDQRLPAN TTQIMHQLRS SSPIQLLQPY PHLMDNSEAV SGGGGGDGFN 300
VIEESIMIKR NMMSSNSHPH ENHHLAIPNK EAGFNNNYID YPLLQPYSTT PNWEIATMNM 360
NLSTCFMNQW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 235 | 245 | RERARARARER |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010441 | 0.0 | AP010441.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT32M13, TM1651, complete sequence. |
| GenBank | DQ202477 | 0.0 | DQ202477.1 Lotus corniculatus var. japonicus CYC3 mRNA, complete cds. |
