PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0051030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 107aa    MW: 11306.8 Da    PI: 7.5143
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0051030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26038.33.8e-122534495
           DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
                     ++l+++p+++ + +++sl+yeA  r+ +Pv Gavg++++++++l+ql ++ +
  Lj1g3v0051030.1  2 SFLSSVPTNQTPGLFRSLLYEAVGRVVNPVTGAVGLLWTGNWHLCQLGVDQV 53
                     68999*****************************************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.862159IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-9250IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MSFLSSVPTN QTPGLFRSLL YEAVGRVVNP VTGAVGLLWT GNWHLCQLGV DQVLRSGAAA  60
AAAFTPPPQL PSLEAAATSS CHQQPPQIPS HQSTFPATST NPFTLFF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0051030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1469801e-156BT146980.1 Lotus japonicus clone JCVI-FLLj-3A20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555291.17e-33LOB domain-containing protein 38
RefseqXP_028219492.17e-33LOB domain-containing protein 38-like
SwissprotQ9SN239e-23LBD38_ARATH; LOB domain-containing protein 38
TrEMBLI3T2N26e-60I3T2N2_LOTJA; Uncharacterized protein
STRINGGLYMA20G26910.13e-32(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-25LOB domain-containing protein 38