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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v0051030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 107aa MW: 11306.8 Da PI: 7.5143 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 38.3 | 3.8e-12 | 2 | 53 | 44 | 95 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 ++l+++p+++ + +++sl+yeA r+ +Pv Gavg++++++++l+ql ++ + Lj1g3v0051030.1 2 SFLSSVPTNQTPGLFRSLLYEAVGRVVNPVTGAVGLLWTGNWHLCQLGVDQV 53 68999*****************************************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.862 | 1 | 59 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-9 | 2 | 50 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MSFLSSVPTN QTPGLFRSLL YEAVGRVVNP VTGAVGLLWT GNWHLCQLGV DQVLRSGAAA 60 AAAFTPPPQL PSLEAAATSS CHQQPPQIPS HQSTFPATST NPFTLFF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v0051030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146980 | 1e-156 | BT146980.1 Lotus japonicus clone JCVI-FLLj-3A20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555291.1 | 7e-33 | LOB domain-containing protein 38 | ||||
Refseq | XP_028219492.1 | 7e-33 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 9e-23 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | I3T2N2 | 6e-60 | I3T2N2_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA20G26910.1 | 3e-32 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-25 | LOB domain-containing protein 38 |